Integrating genomics and phylogenetics in understanding the history of Trichinella species

In 2004, funding was received by Washington University’s Genome Sequencing Center through NHGRI, to completely sequence several nematode genomes as part of a holistic effort to advance our understanding of the human genome and evolution within the Metazoa. Trichinella spiralis was among this group of worms because of its strategic location at the base of the phylum Nematoda, and the belief that extant species represented an ancient divergent event that occurred as early as the Paleozoic. At the same time, a concerted effort was put forth to solidify the phylogeny of extant species of Trichinella based upon molecular analyses of a multi-gene system to understand the history of the genus and thereby enhance utilization of the forthcoming sequence data. Since the inception of this research, several findings have emerged: (1) the size of T. spiralis genome estimated by flow cytometry (71.3 Mb) is substantially smaller than originally predicted (270 Mb); (2) to date, a subset of the total of 3,534,683 sequences have been assembled into a 59.3 Mb unique sequence; (3) 19% of the assembled sequence is comprised of repetitive elements; and (4) sequence data are predicated upon extant T. spiralis which probably diverged as little as 20 million years ago. Thus, the utility of the T. spiralis genome as representative of an archaic species must be tempered with the knowledge that encapsulated and non-encapsulated clades probably separated during the mid-Miocene as temperate ecosystems changed

A tale of three kingdoms: Members of the Phylum Nematoda independently acquired the detoxifying enzyme cyanase through horizontal gene transfer from plants and bacteria

Horizontal gene transfer (HGT) has played an important role in the evolution of nematodes. Among candidate genes, cyanase, which is typically found only in plants, bacteria and fungi, is present in more than 35 members of the Phylum Nematoda, but absent from free-living and clade V organisms. Phylogenetic analyses showed that the cyanases of clade I organisms Trichinella spp., Trichuris spp. and Soboliphyme baturini (Subclass: Dorylaimia) represent a well-supported monophyletic clade with plant cyanases. In contrast, all cyanases found within the Subclass Chromadoria which encompasses filarioids, ascaridoids and strongyloids are homologous to those of bacteria. Western blots exhibited typical multimeric forms of the native molecule in protein extracts of Trichinella spiralis muscle larvae, where immunohisto- chemical staining localized the protein to the worm hypodermis and underlying muscle. Recombinant Trichinella cyanase was bioactive where gene transcription profiles support functional activity in vivo. Results suggest that: (1) independent HGT in parasitic nematodes originated from different Kingdoms; (2) cyanase acquired an active role in the biology of extant Trichinella; (3) acquisition occurred more than 400 million years ago (MYA), prior to the divergence of the Trichinellida and Dioctophymatida, and (4) early, free-living ances- tors of the genus Trichinella had an association with terrestrial plants

Return to Beringia: Parasites Reveal Cryptic Biogeographic History of North American Pikas

Traditional concepts of the Bering Land Bridge as a zone of predominantly eastward expansion from Eurasia and a staging area for subsequent colonization of lower latitudes in North America led to early inferences regarding biogeographic histories of North American faunas, many of which remain untested. Here we apply a host–parasite comparative phylogeographical (HPCP) approach to evaluate one such history, by testing competing biogeographic hypotheses for five lineages of host-specific parasites shared by the collared pika (Ochotona collaris) and American pika (Ochotona princeps) of North America. We determine whether the southern host species (O. princeps) was descended from a northern ancestor or vice versa. Three parasite phylogenies revealed patterns consistent with the hypothesis of a southern origin, which is corroborated by four additional parasite lineages restricted to O. princeps. This finding reverses the traditional narrative for the origins of North American pikas and highlights the role of dispersal from temperate North America into Beringia in structuring northern diversity considerably prior to the Holocene. By evaluating multiple parasite lineages simultaneously, the study demonstrates the power of HPCP for resolving complex biogeographic histories that are not revealed by characteristics of the host alone

Climate\u27s Role in Polar Bear Past [Letters]

Striking temporal concordance between the new date for divergence of polar bears and persistent freezing of the Arctic Ocean suggests that this may be one of relatively few instances in which a specific paleoclimatological episode can be convincingly linked to a specific evolutionary event, and it provides vivid demonstration of climatic forcing as a determinant of diversification in biological systems

Vergleichende Qualitätsuntersuchungen von alten und neuen Gemüsesorten zur Entwicklung von Zuchtzielen für den ökologischen Gemüsebau

Am Beispiel der Gemüsearten Möhren und Kohl wurden alte und neue Sorten sowie Sorten aus biologisch-dynamischer Selektion auf ihre Qualitätsmerkmale hin verglichen. Der Anbau erfolgte nach biologisch-dynamischen Landbaumethoden auf dem Dottenfelderhof in Bad Vilbel. Im Projekt kam ein breites Methodenspektrum zum Einsatz, das Geschmacksuntersuchungen mittels Humansensorik und instrumenteller Analytik umfasste. Diese Untersuchungen geben Aufschluss über die Zusammenhänge verschiedener äußerer und innerer Qualitätsmerkmale von insgesamt 39 Möhren- und 30 Kohlsorten. Bei Möhren wurden durch die Humansensorik in beiden Jahren Hybridsorten (Espredo, Bolero) aufgrund ihrer hohen Süße als die jeweils beliebteste Sorte ermittelt. Diese Feststellung ist in Übereinstimmung mit Ergebnissen der Ernährungswissenschaft, dass allgemein eine Prefärenz zu sehr süßen Nahrungsmitteln zu verzeichnen ist. Aus der Sicht des ökologischen Landbaus werden allerdings samenfeste Sorten bevorzugt, die neben dem süßen Geschmack auch ein typisches Aroma charakterisiert aufweisen. Die am Dottenfelderhof angewendete Selektion auf Geschmack zeigt hierbei insbesondere bei den Rodelika-Typen einen deutlichen Züchtungsfortschritt in Richtung auf eine höhere sensorische Qualität. Durch die Aromaanalytik mittels Festphasen-Mikroextraktion konnten die Terpene Myrcen und Caryophyllen als Negativkomponenten (Off-flavour) ermittelt werden. Hier sollte geprüft werden, inwieweit sich diese Inhaltsstoffe als Markersubstanzen für eine Geschmacksselektion eignen. Bei Kohl zeichnet sich die Sorte Holsteiner Platter durch die höchste Beliebtheit aus. Zwischen dem Gehalt an Glusosinolaten (gesundheitlich positiv und negativ wirksame Inhaltsstoffe) und den anderen Qualitätsparametern, insbesondere dem Geschmack, besteht kein strenger Zusammenhang. Im Ertrag stehen die samenfesten Sorten gleichrangig neben den Hybridsorten. Eine weitere Bearbeitung bezüglich der Uniformität der samenfesten Sorten wäre aber wünschenswert. Auf Grundlage der Ergebnisse können Ziele für eine qualitätsorientierte Züchtung im ökologischen Gemüsebau erarbeitet werden

Global Warming Is Changing the Dynamics of Arctic Host-Parasite Systems

Global climate change is altering the ecology of infectious agents and driving the emergence of disease in people, domestic animals, and wildlife. We present a novel, empirically based, predictive model for the impact of climate warming on development rates and availability of an important parasitic nematode of muskoxen in the Canadian Arctic, a region that is particularly vulnerable to climate change. Using this model, we show that warming in the Arctic may have already radically altered the transmission dynamics of this parasite, escalating infection pressure for muskoxen, and that this trend is expected to continue. This work establishes a foundation for understanding responses to climate change of other host-parasite systems, in the Arctic and globally

Global Warming Is Changing the Dynamics of Arctic Host-Parasite Systems

Global climate change is altering the ecology of infectious agents and driving the emergence of disease in people, domestic animals, and wildlife. We present a novel, empirically based, predictive model for the impact of climate warming on development rates and availability of an important parasitic nematode of muskoxen in the Canadian Arctic, a region that is particularly vulnerable to climate change. Using this model, we show that warming in the Arctic may have already radically altered the transmission dynamics of this parasite, escalating infection pressure for muskoxen, and that this trend is expected to continue. This work establishes a foundation for understanding responses to climate change of other host-parasite systems, in the Arctic and globally

Parasite intensity drives fetal development and sex allocation in a wild ungulate

Altres ajuts: Natural Sciences and Engineering Research Council of Canada 316189-2012-RGPIN. Beringian Coevolution Project (BCP), National Science Foundation DEB 0196095 i 0415668An understanding of the mechanisms influencing prenatal characteristics is fundamental to comprehend the role of ecological and evolutionary processes behind survival and reproductive success in animals. Although the negative influence of parasites on host fitness is undisputable, we know very little about how parasitic infection in reproductive females might influence prenatal factors such as fetal development and sex allocation. Using an archival collection of Dall's sheep (Ovis dalli dalli), a capital breeder that depends on its body reserves to overcome the arctic winter, we investigated the direct and indirect impacts of the parasite community on fetal development and sex allocation. Using partial least squares modelling, we observed a negative effect of parasite community on fetal development, driven primarily by the nematode Marshallagia marshalli. Principal component analysis demonstrated that mothers with low parasite burden and in good body condition were more likely to have female versus male fetuses. This association was primarily driven by the indirect effect of M. marshalli on ewe body condition. Refining our knowledge of the direct and indirect impact that parasite communities can have on reproduction in mammals is critical for understanding the effects of infectious diseases on wildlife populations. This can be particularly relevant for species living in ecosystems sensitive to the effects of global climate change

Trichinella britovi etiological agent of sylvatic trichinellosis in the Republic of Guinea (West Africa) and a re-evaluation of geographical distribution for encapsulated species in Africa

In West Africa, Trichinella infection was documented in humans and animals from Senegal in the 1960s, and the biological characters of one isolate showed a lower infectivity to domestic pigs and rodents when compared with that of a Trichinella spiralis pig isolate from Europe. To identify the Trichinella species present in West Africa, a survey was conducted in a total of 160 wild animals in the Republic of Guinea. Three Viverridae, one true civet (Viverra civetta) and two African palm civets (Nandinia binotata) from the Fouta Djallon Massif, Pilimini Subprefecture, were found positive by artificial digestion of muscle samples. Trichinella larvae from these three viverrids were identified as Trichinella britovi and no difference was detected in three examined sequences from these African isolates and the reference strain of T. britovi from Europe, indicating common ancestry, an historically continuous geographic distribution, and recent isolation for African and European populations. The detection of T. britovi in West Africa modifies our knowledge about the distribution of encapsulated species of Trichinella in Africa. Thus, Trichinella nelsoni is now considered to have a distribution limited to the Eastern part of the Afrotropical region from Kenya to South Africa. This provides a plausible explanation for the presence of Trichinella T8 in Namibia and South Africa, and further suggests that T. britovi could be the Trichinella species circulating among wild animals of Northern Africa